#\u6bcf\u4e24\u884c\u5408\u5e76\u4e3a\u4e00\u884c\uff0c\u5e76\u4e14\u4ee5\u5236\u8868\u7b26\u5206\u9694<\/p>\n
#!\/bin\/bash<\/p>\n
sed -n \u2018{N;s\/\\n\/\\t\/p}\u2019 column.txt > type1.text<\/p>\n
<\/p>\n
#\u5207\u5272\u6587\u4ef6<\/p>\n
#!\/bin\/bash<\/p>\n
for i in {1..50}<\/p>\n
do<\/p>\n
m=$(($i*3-2))<\/p>\n
n=$(($i*3))<\/p>\n
cut -b$m-$n text.text > $i.txt<\/p>\n
i=$(($i+1))<\/p>\n
done<\/p>\n
<\/p>\n
#\u6709\u4e24\u4e2a\u6587\u4ef6\uff0c\u5176\u4e2d\u6587\u4ef6b\u662f\u6587\u4ef6a\u90e8\u5206\u884c\u7684\u96c6\u5408\uff0c\u5148\u5c06fileb\u5206\u89e3\u4e3a\u5c0f\u6587\u4ef6\uff0c\u6bcf\u4e2a\u6587\u4ef6\u4e00\u884c\uff0c\u518d\u4ece\u6587\u4ef6a\u4e2d\u53d6\u51fa\u5305\u542b\u6587\u4ef6b\u7684\u90e8\u5206\u3002\u5c06\u6587\u4ef6b\u62c6\u5f00\u4e3a\u6bcf\u884c\u4e00\u4e2a\u6587\u4ef6\uff0c\u518d\u8fdb\u884c\u4e0b\u9762\u7684\u64cd\u4f5c<\/p>\n
#!\/bin\/bash<\/p>\n
for b in {1..n}<\/p>\n
do<\/p>\n
cat \u201cfile_a\u201d | grep `cat file$b` >>new_file<\/p>\n
b=$(($b+1))<\/p>\n
done<\/p>\n
<\/p>\n
#\u5c06text\u6587\u4ef6\u5206\u89e3\u4e3a\u5c0f\u6587\u4ef6\uff0c\u6bcf\u4e00\u884c\u4e3a\u4e00\u4e2a\u6587\u4ef6<\/p>\n
#!\/bin\/bash<\/p>\n
x=1<\/p>\n
while read Line<\/p>\n
do<\/p>\n
echo \u201c$Line\u201d > file_a$x<\/p>\n
x=$(($x+1))<\/p>\n
done < text.txt<\/p>\n
<\/p>\n
#!\/usr\/bin\/bash<\/p>\n
if [ -f $1 ]<\/p>\n
then<\/p>\n
if [ -z $2 ]<\/p>\n
then<\/p>\n
echo \u201cPlease specify the output file.\u201d<\/p>\n
else<\/p>\n
echo \u201cPlease wait\u2026\u2026\u201d<\/p>\n
cat $1 > .temp.fa<\/p>\n
sed \u2018s\/ \/\/g\u2019 .temp.fa > .temp1.fa<\/p>\n
sed \u2018s\/>BGI_novel_T[0-9]{6}gene=[0-9]{9}\/###\/g\u2019 .temp1.fa > .temp2.fa<\/p>\n
echo `cat .temp2.fa` > .temp3.fa<\/p>\n
sed \u2018s\/###\/\\n###\/g\u2019 .temp3.fa > .temp4.fa<\/p>\n
sed \u2018s\/>\/\\n>\/g\u2019 .temp4.fa > .temp5.fa<\/p>\n
grep ^\u201d>\u201d .temp5.fa > .temp6.fa<\/p>\n
sed \u2018s\/ \/\\n\/g\u2019 .temp6.fa > .temp7.fa<\/p>\n
sed \u2018s\/gene\/ gene\/g\u2019 .temp7.fa > .temp8.fa<\/p>\n
sed \u2018\/^$\/d\u2019 .temp8.fa > $2<\/p>\n
rm .temp*.fa<\/p>\n
fi<\/p>\n
else<\/p>\n
echo \u201cPlease specify the input file.\u201d<\/p>\n
fi<\/p>\n
exit 0<\/p>\n
<\/p>\n
#\u4ee5\u4e00\u4e2a\u6587\u4ef6\u7684\u5185\u5bb9\u66ff\u6362\u53e6\u4e00\u4e2a\u6587\u4ef6\u7684\u5185\u5bb9,\u4e24\u4e2a\u6587\u4ef6\u6570\u91cf\u76f8\u7b49\u3002\u66ff\u6362\u4e0e\u88ab\u66ff\u6362\u7684\u6587\u4ef6\u7ed3\u5c3e\u7684\u6570\u5b57\u76f8\u540c\uff0c\u5206\u522b\u53d6\u51fa\u4e24\u4e2a\u6587\u4ef6\u7684\u5185\u5bb9\u4f5c\u4e3a\u53d8\u91cf\uff0c\u5c06v2\u66ff\u6362\u4e3av1\u3002<\/p>\n
#!\/bin\/bash<\/p>\n
for x in {1\u2026n}<\/p>\n
do<\/p>\n
v1=`cat file_a$x`<\/p>\n
v2=`cat file_b$x`<\/p>\n
sed -i \u201cs|$v2|$v1|g\u201d text.txt<\/p>\n
x=$(($x+1))<\/p>\n
done<\/p>\n
<\/p>\n
#!\/bin\/bash<\/p>\n
GROUP=groups.txt<\/p>\n
SPECIES=alyr.fasta<\/p>\n
#<\/p>\n
sed -i \u2018s\/ \/\\n\/g\u2019 $GROUP<\/p>\n
cat $GROUP | awk \u2018{print \u201c>\u201d$1}\u2019 | sed s\/\\>led\/led\/g > groups1.txt<\/p>\n
cat groups1.txt | grep \u2018^>\u2019 > groups2.txt<\/p>\n
#<\/p>\n
a=1<\/p>\n
while read Line<\/p>\n
do<\/p>\n
echo \u201c$Line\u201d > file$a<\/p>\n
a=$(($a+1))<\/p>\n
done < groups2.txt<\/p>\n
#<\/p>\n
echo `cat $SPECIES` > alyr2.fasta<\/p>\n
sed \u2018s\/>\/\\n>\/g\u2019 alyr2.fasta > alyr3.fasta<\/p>\n
#<\/p>\n
#LENGTH=`cat groups2.txt | wc -l`<\/p>\n
for a in {1..403484}<\/p>\n
do<\/p>\n
head= cat \u201calyr3.fasta\u201d | grep `cat \u201cfile$a\u201d`<\/p>\n
a=$(($a+1))<\/p>\n
done > h.fasta<\/p>\n
#<\/p>\n
a=1<\/p>\n
while read Line<\/p>\n
do<\/p>\n
echo \u201c$Line\u201d > gile$a<\/p>\n
a=$(($a+1))<\/p>\n
done < h.fasta<\/p>\n
#<\/p>\n
cp groups1.txt Results.txt<\/p>\n
#LENGTHH=`cat h.fasta | wc -l`<\/p>\n
for a in {1..35660}<\/p>\n
do<\/p>\n
h1=`cut -c 1-20 gile$a`<\/p>\n
h2=`cat gile$a`<\/p>\n
sed -i s\/$h1\/$h2\/g Results.txt<\/p>\n
a=$(($a+1))<\/p>\n
done<\/p>\n
#<\/p>\n
sed -i \u2018s\/\\.1\/\\.1\\n\/g\u2019 Results.txt<\/p>\n
sed -i \u2018s\/\\.2\/\\.2\\n\/g\u2019 Results.txt<\/p>\n
sed -i \u2018\/^$\/d\u2019 Results.txt<\/p>\n
rm file11* file12* file13* file14*<\/p>\n
rm file1*<\/p>\n
rm file21* file22* file23* file24*<\/p>\n
rm file2*<\/p>\n
rm file31* file32* file33* file34*<\/p>\n
rm file3*<\/p>\n
rm file*<\/p>\n
rm gile*<\/p>\n
echo \u201cDone!\u201d<\/p>\n
<\/p>\n
#!\/bin\/bash<\/p>\n
echo \u201c\u8bf7\u7a0d\u7b49\uff0c\u6b63\u5728\u5904\u7406\u2026\u2026\u201d<\/p>\n
mkdir folder<\/p>\n
file=`ls | grep -v add.sh | grep -v folder`<\/p>\n
mv $file folder<\/p>\n
cd folder<\/p>\n
for var in `ls`; do for i in {1..10}; do cut -d \u2018 \u2018 -f$i $var > $var.$i; done; done<\/p>\n
mkdir dot hebing<\/p>\n
mv *.* dot<\/p>\n
cd dot<\/p>\n
for i in {1..10}; do paste -d \u2018 \u2018 *.$i > ..\/hebing\/$i; i=$((i+1)); done<\/p>\n
cd ..\/hebing<\/p>\n
mkdir jia<\/p>\n
cut -d \u2018 \u2018 -f1 ..\/hebing\/1 > jia\/s1<\/p>\n
cat 2 | awk -F \u201d \u201d \u2018{for (i=1; i<=NF; i++) sum += $i; print sum; sum=0}\u2019 > jia\/s2<\/p>\n
for j in {3..10}; do cat $j | awk -F \u201d \u201d \u2018{for (i=1; i<=NF; i++) sum += $i; print sum; sum=0}\u2019 > jia\/c$j; done<\/p>\n
cd jia<\/p>\n
paste -d \u2018 \u2018 c3 c4 c5 > 345; paste -d \u2018 \u2018 c6 c7 c8 c9 c10 > 678910<\/p>\n
cat 345 | awk -F \u201d \u201d \u2018{for (i=1; i<=NF; i++) sum += $i; print sum; sum=0}\u2019 > s3<\/p>\n
cat 678910 | awk -F \u201d \u201d \u2018{for (i=1; i<=NF; i++) sum += $i; print sum; sum=0}\u2019 > s4<\/p>\n
for i in {2,3,4}; do cat s$i | awk \u2018{printf (\u201c%.7f\\n\u201d,$1)}\u2019 > s$i$i; i=$((i+1)); done<\/p>\n
# cat s2 | awk \u2018{printf (\u201c%.7f\\n\u201d,$1)}\u2019 > s22<\/p>\n
# cat s3 | awk \u2018{printf (\u201c%.7f\\n\u201d,$1)}\u2019 > s33<\/p>\n
# cat s4 | awk \u2018{printf (\u201c%.7f\\n\u201d,$1)}\u2019 > s44<\/p>\n
paste -d \u201c\\t\u201d s1 s22 s33 s44 > result.text<\/p>\n
mv result.text ..\/..\/..\/<\/p>\n
cd ..\/..<\/p>\n
for var in `ls`; do if [ -f $var ]; then mv $var ..; fi; done<\/p>\n
# cd ..; rm -r folder<\/p>\n
echo \u201c\u5b8c\u6bd5!\u201d<\/p>\n
<\/p>\n
#!\/bin\/bash<\/p>\n
if [ -z $1 ]<\/p>\n
then<\/p>\n
echo \u201c\u8bf7\u5728\u811a\u672c\u540e\u7a7a\u4e00\u683c\uff0c\u7136\u540e\u8f93\u5165\u4e00\u4e2a\u6587\u4ef6\u7684\u540d\u5b57\uff0c\u8fd9\u4e2a\u6587\u4ef6\u7684\u7b2c\u4e00\u5217\u5c06\u4f5c\u4e3a\u7ed3\u679c\u7684\u7b2c\u4e00\u5217\u3002 \u201d<\/p>\n
else<\/p>\n
echo \u201c\u8bf7\u7a0d\u7b49\uff0c\u6b63\u5728\u5904\u7406\u2026\u2026\u201d<\/p>\n
mkdir data.data<\/p>\n
a=`ls | grep -v shell.sh | grep -v data.data`<\/p>\n
mv $a data.data<\/p>\n
cat data.data\/* > all.text<\/p>\n
mv data.data\/* .<\/p>\n
rm -r data.data<\/p>\n
sed -i \u201cs\/ \/\\t\/g\u201d all.text<\/p>\n
cat $1 | cut -d \u201d \u201d -f1 > s1<\/p>\n
cat all.text | awk -F \u201c\\t\u201d \u2018{sum+=$2} END {print sum}\u2019 > s2<\/p>\n
for i in {3..10}<\/p>\n
do<\/p>\n
cat all.text | awk -F \u201c\\t\u201d \u2018{sum+=$i} END {print sum}\u2019 > c$i<\/p>\n
done<\/p>\n
paste -d \u201c\\t\u201d c3 c4 c5 c6 c7 c8 c9 c10 > result1.text<\/p>\n
cat result1.text | awk -F \u201c\\t\u201d \u2018{s3=$1+$2+$3} {print s3}\u2019 > s3<\/p>\n
cat result1.text | awk -F \u201c\\t\u201d \u2018{s4=$4+$5+$6+$7+$8} {print s4}\u2019 > s4<\/p>\n
paste -d \u201c\\t\u201d s1 s2 s3 s4 > result.text<\/p>\n
rm all.text result1.text c3 c4 c5 c6 c7 c8 c9 c10 s1 s2 s3 s4<\/p>\n
echo \u201c\u5b8c\u6bd5! \u201d<\/p>\n
fi<\/p>\n","protected":false},"excerpt":{"rendered":"
#\u6bcf\u4e24\u884c\u5408\u5e76\u4e3a\u4e00\u884c\uff0c\u5e76\u4e14\u4ee5\u5236\u8868\u7b26\u5206\u9694 #!\/bin\/bash sed -n \u2018{N;s\/\\n\/\\t\/p}\u2019 column.txt > type1.text #\u5207\u5272\u6587\u4ef6 #!\/bin\/bash for i in {1..50} do m=$(($i*3-2)) n=$(($i*3)) cut -b$m-$n text.text > $i.txt i=$(($i+1)) done #\u6709\u4e24\u4e2a\u6587\u4ef6\uff0c\u5176\u4e2d\u6587\u4ef6b\u662f\u6587\u4ef6a\u90e8\u5206\u884c\u7684\u96c6\u5408\uff0c\u5148\u5c06fileb\u5206\u89e3\u4e3a\u5c0f\u6587\u4ef6\uff0c\u6bcf\u4e2a\u6587\u4ef6\u4e00\u884c\uff0c\u518d\u4ece\u6587\u4ef6a\u4e2d\u53d6\u51fa\u5305\u542b\u6587\u4ef6b\u7684\u90e8\u5206\u3002\u5c06\u6587\u4ef6b\u62c6\u5f00\u4e3a\u6bcf\u884c\u4e00\u4e2a\u6587\u4ef6\uff0c\u518d\u8fdb\u884c\u4e0b\u9762\u7684\u64cd\u4f5c #!\/bin\/bash for b in {1..n} do cat \u201cfile_a\u201d | grep `cat file$b` >>new_file b=$(($b+1)) done #\u5c06text\u6587\u4ef6\u5206\u89e3\u4e3a\u5c0f\u6587\u4ef6\uff0c\u6bcf\u4e00\u884c\u4e3a\u4e00\u4e2a\u6587\u4ef6 #!\/bin\/bash x=1 while read Line do …<\/p>\n","protected":false},"author":2,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[41],"tags":[],"class_list":["post-440","post","type-post","status-publish","format-standard","hentry","category-bdobq3k1tczue"],"_links":{"self":[{"href":"https:\/\/eternalsphere.net\/echoes\/index.php\/wp-json\/wp\/v2\/posts\/440","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/eternalsphere.net\/echoes\/index.php\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/eternalsphere.net\/echoes\/index.php\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/eternalsphere.net\/echoes\/index.php\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/eternalsphere.net\/echoes\/index.php\/wp-json\/wp\/v2\/comments?post=440"}],"version-history":[{"count":1,"href":"https:\/\/eternalsphere.net\/echoes\/index.php\/wp-json\/wp\/v2\/posts\/440\/revisions"}],"predecessor-version":[{"id":2246,"href":"https:\/\/eternalsphere.net\/echoes\/index.php\/wp-json\/wp\/v2\/posts\/440\/revisions\/2246"}],"wp:attachment":[{"href":"https:\/\/eternalsphere.net\/echoes\/index.php\/wp-json\/wp\/v2\/media?parent=440"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/eternalsphere.net\/echoes\/index.php\/wp-json\/wp\/v2\/categories?post=440"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/eternalsphere.net\/echoes\/index.php\/wp-json\/wp\/v2\/tags?post=440"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}